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Spring, 2004 Lecture Outline

2/10 GENOMIC ORGANIZATION & EVOLUTION


Nucleic acid structure & composition:

DNA or RNA; ss or ds; linear or circular
terminal structures; open reading frames [ORFs]
conservation strategies; regulatory signals & strategies

Genomes: small to large; single molecule or segmented

Terminology 102a:

replicative intermediate [RI]
replicative form [RF]
defective interfering [DI] particles

Genetic mapping: recombination; reassortment; restriction maps; transcription maps

Terminology 102b: strain; type; variant

Mutations:

antigenic drift vs. antigenic shift
types defined by physical changes [genotypic]: point & insertion/deletion

types defined by effects [phenotypic]: DI particles, nonsense, temperature-sensitive [ts] & cold-sensitive [cs], host range, drug resistance, revertant

Evolution:

mutations & fast-forward strategies; effects
theories of origin of viruses- DNA vs. RNA
macromolecular, retrograde, selfish DNA, protovirus, primordial RNA, DNA as RNA intermediate

Something to think about: Do viruses contribute to evolution of other organisms? If so, how? [Discussion topic 3/12]

 

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 Updated 1/25/04 by thatcher@sonoma.edu